I have no good answers for you. I don't know what Jamie and Marty's backlog looks like or the circumstances around your bikes. I also don't know specifics around what happened to your bikes. Lots of things could have gone wrong. They're internal combustion engines and I'd be guessing at this point. I'll toss out some thoughts, in no particular order.
If the leak is at the base gasket, that doesn't indicate a cracked head. It could be a stud pulling loose. Sand castings are soft. The fix involves pulling the engine, drilling and installing inserts in the case, then using Atlantic's stud kit. You'd need someone with a machine shop or a manual milling machine to do that job. If the inserts are off-axis even a little, the cylinders won't go over the studs.
How mechanical are you? A compression test of both front and rear cylinders is where I'd start. If you don't have the tools or aren't comfortable with that, a local independent shop should be at least do the compression test and tell you if something is awry. That couldn't be more than an hour of labor and at least tell you if the pumping portion of the engine is working properly.
I know that some bikes had issues with cracked heads. I'm no expert but, I had one. Luckily it happened back at a time when there was still a handful of heads available. I don't know what the fix is today.
It's not clear where you're located since you mentioned places on both coasts but, there is another service resource listed on the tech page in Minnesota:
http://www.excelsiorhenderson.com/pages/tech/partsservice.htmlSome owners will take on jobs like that as part of a side-hobby. They can chime in if they feel like they have the space and time right now.
So where are you and the bikes? One is at Atlantic and one with you where?