Hey Mike,
I'm fresh outta the hospital, with a brand new hip.... looking for something to occupy my itty bitty head, and up you pop.... cool...
If I remember correctly, your tranny was updated. So from here it seems a bit odd, that you're having the false neutrals, and missed shifts around 2nd. .....
But it could very easily be the shifter and detent spring. I have one of Bobby's, and for what it was and in its day, has worked very well. Have placed several of Jamie/Marty's shift kit, and love the end results of theirs (smoother, and proactive).
Not witnessed John Jones as of yet, but I'm sure its a good one 2.
Not sure what to tell you to look for, on that shifter, other than worn shims/bushings, and the spring a bit tired.
To replace the shfter/detent, you will not have to pull the tranny, as its mounted on the outside of the cassette. But if you're gonna pull it anyways, that will make it easier to replace. ...
With my bobby kit, for me to find neutral before shutting down (I'm sure this is a common move, amoung us owners) is to just quick blip the throttle to between 1.5-2k rpms. And at the same time just barely toss shifter up....
Once you get the hang of it, you don't even think about it anymore.....
give me a shout when you get that far, and we'll verbalize what you see.....